The dinosaur you’re eating for Thanksgiving dinner

I giggle a little every time people ask about the dinosaur extinction (on the inside because giggling in peoples’ faces is rude (so I’ve been told… repeatedly)). Dinosaurs, in the strictest sense, are not extinct. They are walking and flying around us everyday.

And this week, they are sitting in the middle of the table.

But, in all fairness, I should mention that this is an ongoing debate. Not whether or not Thanksgiving is going to be delicious (that should be settled soon), but whether dinosaurs still walk amongst us (and will soon be in your belly).






When talking about phylogenies, don’t use words like “basal”

Over at the blog “For the love of treesStacey Smith has recently posted an interesting (and somewhat twitter controversial) post about how to correctly talk about evolution and phylogenies.

For starters, don’t use the word basal. She states that by her estimation the term “basal” is misused ~90% of the time, and it perpetuates a number of misconceptions about how evolution works.

Intrigued? Go check out the post. Or enjoy this phylogeny of basil posted by Maggie Schedl (which is the most basal basil?!?)

The Basil-Lineage problem: which is the #mostprimitivebasil

The Basil-Lineage problem: which is the #mostprimitivebasil


How the squashes hitched a ride with humans

Squashes are funny, as fruits go. Even after years of selection for human consumption they have thick, hard rinds, they’re not particularly sweet — in fact, they contain bitter compounds called cucurbitacins — and their seeds don’t separate from their flesh very easily. That all suggests that the wild ancestors of butternuts and pumpkins were dispersed by large mammals, but squashes are native to the Americas, and there haven’t been many large mammals of the sort that would eat them since humans showed up there, back at the end of the last ice age. Of course, those humans since domesticated squashes, which would obviate the need for seed dispersal — and a new genetic study of wild and domesticated squash species provides support for exactly that hypothesis.

Ed Yong has a nice write-up over at Phenomena:

[Squashes’] old dispersers were gone and the most likely substitutes were small rodents with diverse diets, who could have chiselled through the fruits and carried the seeds to pastures new. But Kistler found that these same animals are the most likely to be put off by the squashes’ bitter tastes. Compared to larger animals like elephants or rhinos, he found that smaller ones like mice and shrews have far more TAS2R genes, which allow them to taste bitter compounds.

Humans can’t stomach cucurbitacins either. People who’ve been unfortunate enough to swallow high levels of these chemicals have come down with a severe diarrhoeal illness called Toxic Squash Syndrome. But perhaps some ancient hunter-gatherers became skilled at finding individual squashes that produced low or tolerable levels. After eating such plants, they would have pooped the seeds out, inadvertently sowing the land with more palatable strains.

I am not personally a great fan of pumpkin pie, particularly since I tried sweet potato last Thanksgiving — but maybe this finding will make for some nice chatter over coffee after dinner. Unless you happen to have an uncle who’s into Pleistocene rewilding, anyway.


Kistler L., L.A. Newsom, T.M. Ryan, A.C. Clarke, B.D. Smith, & G.H. Perry. 2015. Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domestication
Proc. Nat. Acad. Sci.; published ahead of print November 16, 2015, doi: 10.1073/pnas.1516109112.

Biologist Having Too Much Fun Testing Evolution Education Game To Actually Study Evolution

Phylogenetics has never been this much fun. Seriously. (Screenshot: Evolution Lab)

Phylogenetics has never been this much fun. Seriously. (Screenshot: Evolution Lab)

NOVA, the flagship science program on U.S. Public Television, has just launched a new Evolution Lab website, which is chocked full of great information about the history of life on Earth, and how we study it. But my favorite thing has got to be the accompanying online game, which asks you to assemble organisms into evolutionary trees based on their traits and even their DNA sequences — it’s slick and pretty and it guides you into the logic of evolutionary relationships without explaining them point-by-point, unless you want that. I’ll be keeping this in mind for the next time I teach a basic class in phylogenetics.

Understanding the evolution of nocturnal mammals by studying their extinct relatives

Humans are diurnal. We sleep at night and are active during the day. (That isn’t to say that I feel particularly diurnal most mornings, given that my alarm has to make it through a few snooze cycles to wake me up and coffee is the only thing keeping me from napping under my desk at work.) Most mammals, though, don’t share our ostensible predilection for daylight; only 20% of mammal species are diurnal like us. Of our mammalian relatives, nearly 70% are nocturnal. The rest are crepuscular (active at dawn and dusk) or cathemeral (active during both day and night).

A tarsier (Flickr: )

A tarsier from Borneo. (Flickr: Erwin Bolwidt)

Mammalogists like myself often think nocturnality is a particularly mammalian thing because—let’s be honest here—nearly all of the coolest nocturnal vertebrates are mammals. How can you compete with the likes of tarsiers, vampire bats, leopards, and—strangest of them all—the aye-aye? I’ll throw the ornithologists a bone and acknowledge the enduring awesomeness of owls, but they are the odd birds out in a group that’s mostly diurnal.

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Random Natural History: Ebola

through a glass, darkly

Currently there is a catastrophic outbreak of Ebola happening in West Africa. Over 1700 infections have been recorded with nearly 1000 deaths, making it the deadliest outbreak of ebola known. Infection results in a hemorrhagic fever, which starts out a bit like the influenza, but can result in bleeding from mucous membranes, organ failure, and ultimately death. But what is Ebola?

Ebola is a Filovirus. Filoviruses are a small group of viruses only known to infect mammals. They are so named because of their filamentous shape. They have tiny genomes, only ~19,000 base pairs in length, containing only seven protein coding genes and two regulatory regions. By contrast, the human genome is over 3 billion base pairs, contains around twenty thousand genes and has innumerable (by which I mean as yet unnumbered regulatory regions). Because of ebola’s simplicity, (as with all viruses), it cannot reproduce without commandeering the cellular machinery of its hosts. In the words of Cormac McCarthy, These anonymous creatures… may seem little or nothing in the world. Yet the smallest crumb can devour us.

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Why we should all (evolutionary biologists) be excited about studying Cannabis.



Figure 1. Cannabis plants at the Centennial Seeds facilities.

This is a guest post by Daniela Vergara, a postdoctoral researcher studying the genomic architecture of hybrid species of sunflowers and Cannabis in Nolan Kane’s Lab at the University of Colorado, Boulder.  Daniela also blogs about science at A Ciencia Abierta. Check out her blog for a spanish version of this post.

Cannabis is definitely a cool plant. It has fun names like matanuska thunderfuck, jesus OG or trainwreck and it has been trendy among humans for a very long time (humans have utilized it for thousands of years). Despite this long history, and the fact that Cannabis is the most widely used recreational drug in the world [1], the genomics and the general the biology of these plants have only been partially studied. At the Cannabis Genomic Research Initiative (CGRI) at the University of Colorado Boulder we want to study this genus of plants for several reasons, including: (i) its medical significance, (ii) its importance in the biofuel, fiber, oil, textile and food industries, (iii) its long co-evolutionary relationship with humans as an ancient crop, and (iv) in general, because it is an exciting emerging study system in evolutionary biology.

Why should evolutionary biologists be excited about studying Cannabis?

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